MPtopo Database from the Stephen White Lab
Monotopic or Complex TM Segment Proteins
Protein Name SwissProt ID PIR Unique ID PDB ID Reference (linked to Pub Med)
ADP/ATP carrier protein* (bovine)
3D_helix set 		P02722 A43646 XWBO 1OKC Pebay-Peyroula, E., et al. (2003). Nature, 426, 39-44
aquaporin 1* (bovine)
3D_helix set 		P47865 JC2348 1J4N Sui, H.X., et al. (2001). Nature, 414, 872-878
aquaporin 1* (human)
3D_helix set 		P29972 A41616 1FQY Murata, K. Mitsuoka, et al. (2000). Nature, 407, 599-605
aquaporin Z* (E. coli)
3D_helix set 		P48838 C64826 1RC2 Savage, D.F., et al. (2003). PLoS Biology, 3, 334-340
ClC chloride channel* (E. coli)
3D_helix set 		P37019 C64739 1KPK 1OTS Dutzler, R., et al. (2002). Nature, 415, 287-294
ClC chloride channel* (S. typhimurium)
3D_helix set 		Q8ZRP8 1KPL Dutzler, R., et al. (2002). Nature, 415, 287-294
Glycerol Channel, GlpF* (E. coli)
3D_helix set 		P11244 XMECGF 1FX8 Fu, D., et al. (2000). Science, 290, 481-486
KcsA potassium channel* (S. lividans)
3D_helix set 		Q54397 S60172 1BL8 Doyle, D.A., et al. (1998). Science, 280, 69-77
KirBac1.1 potassium channel* (Burkholderia pseudomallei)
3D_helix set 		P83698 1P7B Kuo, A., et al. (2003). Science, 300, 1922-1926
KvAP potassium channel* (Aeropyrum pernix)
3D_helix set 		Q9YDF8 1ORQ Jiang, Y.X., et al. (2003). Nature, 423, 33-41
MthK K+ channel* (Methanobacterium thermoautotrophicum)
3D_helix set 		O27564 H69069 1LNQ Jiang, Y.X., et al. (2002). Nature, 417, 515-522
photosystem I F subunit* (Synechococcus elongatus)
3D_helix set 		P0A401 1JB0 Jordan, P., et al. (2001). Nature, 411, 909-917
fatty acid amide hydrolase* (Rattus norvegicus)
3D_other set 		P97612 1MT5 Bracey, M.H., et al. (2002). Science, 298, 1793-1796
Monoamine oxidase B* (human)
3D_other set 		P27338 B36175 JH0818 1GOS Binda, C., et al. (2002). Nature Struct Biol, 9, 22-26
OmpF porin* (E. coli)
3D_other set 		P02931 MMECF 1OPF Cowan, S.W., et al. (1992). Nature, 358, 727-733
OmpK36 osmoporin* (Klebsiella pneumoniae)
3D_other set 		Q48473 1OSM Dutzler, R., et al. (1999). Structure, 7, 425-434
outer membrane protein TolC* (Escherichia coli)
3D_other set 		P02930 MMECTC 1EK9 Koronakis, V., et al. (2000). Nature, 405, 914-919
PhoE phosphoporin* (E. coli)
3D_other set 		P02932 MMECPE 1PHO Cowan, S.W., et al. (1992). Nature, 358, 727-733
prostaglandin synthase-1 (COX-1)* (sheep)
3D_other set 		P05979 S00561 1PRH Picot, D., et al. (1994). Nature, 367, 243-249
prostaglandin synthase-2 (COX-2)* (Mus musculus)
3D_other set 		Q05769 1CX2 Kurumbail, R.G., et al. (1996). Nature, 384, 644-648
squalene-hopene cyclase* (Alicyclobacillus acidocaldarius)
3D_other set 		P33247 A43300 S13856 2SQC Wendt, K.U., et al. (1999). J Mol Biol, 286, 175-187