MPtopo Database from the Stephen White Lab
Protein Name SwissProt ID PIR Unique ID PDB ID Reference (linked to Pub Med)
AChR pore alpha subunit (Torpedo marmorata)
3D_helix set 		P02711 1OED Miyazawa, A., et al. (2003). Nature, 423, 949-955
AChR pore beta subunit (Torpedo marmorata)
3D_helix set 		Q6S3I0 1OED Miyazawa, A., et al. (2003). Nature, 423, 949-955
AChR pore delta subunit (Torpedo marmorata)
3D_helix set 		Q6S3H8 1OED Miyazawa, A., et al. (2003). Nature, 423, 949-955
AChR pore gamma subunit (Torpedo marmorata)
3D_helix set 		Q6S3H9 1OED Miyazawa, A., et al. (2003). Nature, 423, 949-955
AcrB multidrug transporter (E. coli)
3D_helix set 		P31224 B36938 1IWG Murakami, S., et al. (2002). Nature, 419, 587-593
ADP/ATP carrier protein* (bovine)
3D_helix set 		P02722 A43646 XWBO 1OKC Pebay-Peyroula, E., et al. (2003). Nature, 426, 39-44
amonia transporter AmtB (E. coli)
3D_helix set 		P69681 A90692 C64775 E85542 1U7G Khademi, S., et al. (2004). Science, 305, 1587-1594
aquaporin 1* (bovine)
3D_helix set 		P47865 JC2348 1J4N Sui, H.X., et al. (2001). Nature, 414, 872-878
aquaporin 1* (human)
3D_helix set 		P29972 A41616 1FQY Murata, K. Mitsuoka, et al. (2000). Nature, 407, 599-605
aquaporin Z* (E. coli)
3D_helix set 		P48838 C64826 1RC2 Savage, D.F., et al. (2003). PLoS Biology, 3, 334-340
bacteriorhodopsin (H. salinarium)
3D_helix set 		P02945 RAHSB 1BRX 2BRD 1AP9 1AT9 1BRD Luecke, H., et al. (1999). J Mol Biol, 291, 899-911
BtuCD ABC transporter, BtuC subunit (Escherichia coli)
3D_helix set 		Q8X4L7 B90931 1L7V Locher, K.P., et al. (2002). Science, 296, 1091-1098
Ca ATPase, SR (rabbit)
3D_helix set 		P04191 PWRBFC 1EUL Toyoshima, C., et al. (2000). Nature, 405, 647-655
ClC chloride channel* (E. coli)
3D_helix set 		P37019 C64739 1KPK 1OTS Dutzler, R., et al. (2002). Nature, 415, 287-294
ClC chloride channel* (S. typhimurium)
3D_helix set 		Q8ZRP8 1KPL Dutzler, R., et al. (2002). Nature, 415, 287-294
CorA Mg2+ transporter (Thermotoga maritima)
3D_helix set 		Q9WZ31 H72360 2BBH Lunin, V.V., et al. (2006). Nature, 440, 833-837
Cysteine Oxidase DsbB (Escherichia coli)
3D_helix set 		P0A6M2 F64864 2HI7 Inaba, K., et al. (2006). Cell, 127, 789-801
cyt. b6f complex, cyto b6 subunit (Mastigocladus laminosus)
3D_helix set 		1UM3 Kurisu, G., et al. (2003). Science, 302, 1009-1014
cyt. b6f complex, cytochrome f (Mastigocladus laminosus)
3D_helix set 		1UM3 Kurisu, G., et al. (2003). Science, 302, 1009-1014
cyt. b6f complex, PetG (Mastigocladus laminosus)
3D_helix set 		1UM3 Kurisu, G., et al. (2003). Science, 302, 1009-1014
cyt. b6f complex, PetL (Mastigocladus laminosus)
3D_helix set 		1UM3 Kurisu, G., et al. (2003). Science, 302, 1009-1014
cyt. b6f complex, PetM (Mastigocladus laminosus)
3D_helix set 		1UM3 Kurisu, G., et al. (2003). Science, 302, 1009-1014
cyt. b6f complex, PetN (Mastigocladus laminosus)
3D_helix set 		1UM3 Kurisu, G., et al. (2003). Science, 302, 1009-1014
cyt. b6f complex, Rieske iron-sulfur protein (Mastigocladus laminosus)
3D_helix set 		1UM3 Kurisu, G., et al. (2003). Science, 302, 1009-1014
cyt. b6f complex, subunit IV (Mastigocladus laminosus)
3D_helix set 		1UM3 Kurisu, G., et al. (2003). Science, 302, 1009-1014
cyto C oxidase. Subunit VIIb (bovine)
3D_helix set 		P13183 OSBO7B 1OCC Tsukihara, T., et al. (1996). Science, 272, 1136-1144
cyto. bc1 complex. Chain C (bovine)
3D_helix set 		P00157 CBBO 1BGY 1QCR 1BCC Iwata, S., et al. (1998). Science, 281, 64-71
cyto. bc1 complex. Chain D (bovine)
3D_helix set 		P00125 CCBO1 1BGY 1QCR 1BCC Iwata, S., et al. (1998). Science, 281, 64-71
cyto. bc1 complex. Chain E (bovine)
3D_helix set 		P13272 A34660 1BGY 1QCR 1BCC Iwata, S., et al. (1998). Science, 281, 64-71
cyto. bc1 complex. Chain G (bovine)
3D_helix set 		P13271 A24864 1BGY 1QCR 1BCC Iwata, S., et al. (1998). Science, 281, 64-71
cyto. bc1 complex. Chain J (bovine)
3D_helix set 		P00130 CCBO17 1BGY 1QCR 1BCC Iwata, S., et al. (1998). Science, 281, 64-71
cyto. bc1 complex. Chain K (bovine)
3D_helix set 		P07552 CBBOC6 1BGY 1QCR 1BCC Iwata, S., et al. (1998). Science, 281, 64-71
cyto. C oxidase. Subunit I (bovine)
3D_helix set 		P00396 ODBO1 1OCC Tsukihara, T., et al. (1996). Science, 272, 1136-1144
cyto. C oxidase. Subunit I (P. denitrificans)
3D_helix set 		P98002 S08270 1QLE Iwata, S., et al. (1995). Nature, 376, 660-669
cyto. C oxidase. Subunit II (bovine)
3D_helix set 		P00404 OBBO2 1OCC Tsukihara, T., et al. (1996). Science, 272, 1136-1144
cyto. C oxidase. Subunit II (P. denitrificans)
3D_helix set 		P08306 1QLE Iwata, S., et al. (1995). Nature, 376, 660-669
cyto. C oxidase. Subunit III (bovine)
3D_helix set 		P00415 OTBO3 1OCC Tsukihara, T., et al. (1996). Science, 272, 1136-1144
cyto. C oxidase. Subunit III (P. denitrificans)
3D_helix set 		P06030 S03807 1QLE Iwata, S., et al. (1995). Nature, 376, 660-669
cyto. C oxidase. Subunit IV (bovine)
3D_helix set 		P00423 OLBO4 1OCC Tsukihara, T., et al. (1996). Science, 272, 1136-1144
cyto. C oxidase. Subunit IV (P. denitrificans)
3D_helix set 		P77921 S03807 1QLE Iwata, S., et al. (1995). Nature, 376, 660-669
cyto. C oxidase. Subunit VIa (bovine)
3D_helix set 		P07471 OGBO6 1OCC Tsukihara, T., et al. (1996). Science, 272, 1136-1144
cyto. C oxidase. Subunit VIc (bovine)
3D_helix set 		P04038 OGBO6C 1OCC Tsukihara, T., et al. (1996). Science, 272, 1136-1144
cyto. C oxidase. Subunit VIIa (bovine)
3D_helix set 		P07470 OSBO7A 1OCC Tsukihara, T., et al. (1996). Science, 272, 1136-1144
cyto. C oxidase. Subunit VIIc (bovine)
3D_helix set 		P00430 OSBO8A 1OCC Tsukihara, T., et al. (1996). Science, 272, 1136-1144
cyto. C oxidase. Subunit VIII (bovine)
3D_helix set 		P10175 OSBO8 1OCC Tsukihara, T., et al. (1996). Science, 272, 1136-1144
cyto.c oxidase. Chain I (Thermus thermophilus)
3D_helix set 		Q56408 T52481 1EHK Soulimane, T., et al. (2000). EMBO J., 19, 1766-1776
cyto.c oxidase. Chain II (Thermus thermophilus)
3D_helix set 		P98052 T52480 1EHK Soulimane, T., et al. (2000). EMBO J., 19, 1766-1776
cyto.c oxidase. Chain IIa (Thermus thermophilus)
3D_helix set 		P82543 1EHK Soulimane, T., et al. (2000). Protein Sci, 9, 2068-2073
F-type Na+-ATPase Subunit C (Ilyobacter tartaricus)
3D_helix set 		Q8KRV3 1YCE Meier, T., et al. (2005). Science, 308, 659-662
F1F0 ATPsynthase Subunit C (E. coli)
3D_helix set 		P00844 LWECA 1A91 Girvin, M.E., et al. (1998). Biochemistry, 37, 8817-8824
formate dehydrogenase-N, beta chain (E. coli)
3D_helix set 		P24184 JS0629 1KQF 1KQG Jormakka, M., et al. (2002). Science, 295, 1863-1868
formate dehydrogenase-N, gamma chain (E. coli)
3D_helix set 		P24185 JS0630 1KQG 1KQF Jormakka, M., et al. (2002). Science, 295, 1863-1868
Fumarate Reductase alpha subunit (W. succinogenes)
3D_helix set 		P17413 S10164 1QLA Lancaster, C.R.D., et al. (1999). Nature, 402, 377-385
Fumarate Reductase. 13 kD anchor (E. coli)
3D_helix set 		P03806 WMEC13 1L0V Iverson, T.M., et al. (1999). Science, 284, 1961-1966
Fumarate Reductase. 15 kD anchor (E. coli)
3D_helix set 		P03805 S56380 1FUM Iverson, T.M., et al. (1999). Science, 284, 1961-1966
Glycerol Channel, GlpF* (E. coli)
3D_helix set 		P11244 XMECGF 1FX8 Fu, D., et al. (2000). Science, 290, 481-486
glycerol-3-phosphate transporter (E. coli)
3D_helix set 		P08194 JNECGT 1PW4 Huang, Y.F., et al. (2003). Science, 301, 616-620
glycophorin A (human)
3D_helix set 		P02724 GFHUE 1AFO Furthmayr, H., et al. (1978). Arch Biochem Biophys, 185, 21-29
halorhodopsin (H. salinarium)
3D_helix set 		P16102 A26161 1E12 Kolbe, M., et al. (2000). Science, 288, 1390-1396
KcsA potassium channel* (S. lividans)
3D_helix set 		Q54397 S60172 1BL8 Doyle, D.A., et al. (1998). Science, 280, 69-77
KirBac1.1 potassium channel* (Burkholderia pseudomallei)
3D_helix set 		P83698 1P7B Kuo, A., et al. (2003). Science, 300, 1922-1926
KvAP potassium channel* (Aeropyrum pernix)
3D_helix set 		Q9YDF8 1ORQ Jiang, Y.X., et al. (2003). Nature, 423, 33-41
lactose permease, 3D structure (E. coli)
3D_helix set 		P02920 GREC 1PV6 1PV7 Huang, Y.F., et al. (2003). Science, 301, 610-615
LHC-II (Spinacia oleracea)
3D_helix set 		P12333 JQ0020 1RWT Liu, Z., et al. (2004). Nature, 428, 287-292
Light Harvesting Complex. alpha chain (R. acidophila)
3D_helix set 		P26789 S06365 1KZU McDermott, G., et al. (1995). Nature, 374, 517-521
Light Harvesting Complex. alpha chain (R. molischianum)
3D_helix set 		P97253 A49290 1LGH Koepke, J., et al. (1996). Structure, 4, 581-597
Light Harvesting Complex. beta chain (R. acidophila)
3D_helix set 		P26790 S07673 1KZU McDermott, G., et al. (1995). Nature, 374, 517-521
Light Harvesting Complex. beta chain (R. molischianum)
3D_helix set 		P95673 B49290 1LGH Koepke, J., et al. (1996). Structure, 4, 581-597
M13 coat protein
3D_helix set 		P03618 2CPB 2CPS Bashtovy, D. Marsh, et al. (2001). Protein Sci, 10, 979-987
Metalloenzyme pMMO subunit pmoA (Methylococcus capsulatus)
3D_helix set 		Q607G3 1YEW Lieberman, R.L., et al. (2005). Nature, 434, 177-182
Metalloenzyme pMMO subunit pmoB (Methylococcus capsulatus)
3D_helix set 		Q49104 B57266 1YEW Lieberman, R.L., et al. (2005). Nature, 434, 177-182
Metalloenzyme pMMO subunit pmoC (Methylococcus capsulatus)
3D_helix set 		O05111 1YEW Lieberman, R.L., et al. (2005). Nature, 434, 177-182
Mito. Respiratory Complex protein CybL (pig)
3D_helix set 		1ZOY Sun, F., et al. (2005). Cell, 121, 1043-1057
Mito. Respiratory protein CybS (pig)
3D_helix set 		1ZOY Sun, F., et al. (2005). Cell, 121, 1043-1057
MscL mechanosensor channel monomer (M. tuberculosis)
3D_helix set 		O53898 E70821 1MSL Chang, G., et al. (1998). Science, 282, 2220-2226
MscS mechanosensor channel monomer (E. coli)
3D_helix set 		P0C0S1 QQEC4 1MXM Bass, R.B., et al. (2002). Science, 298, 1582-1587
MthK K+ channel* (Methanobacterium thermoautotrophicum)
3D_helix set 		O27564 H69069 1LNQ Jiang, Y.X., et al. (2002). Nature, 417, 515-522
multidrug resistance protein EmrD (E.coli)
3D_helix set 		P31442 2GFP Yin, Y., et al. (2006). Science, 312, 741-744
Na+_H+_antiporter (E. coli)
3D_helix set 		P13738 C64722 1ZCD Hunte, C., et al. (2005). Nature, 435, 1197-1202
NaK channel, Na+ complex (Bacillus cereus)
3D_helix set 		Q81HW2 2AHY Shi, N., et al. (2006). Nature, 440, 570-574
nitrate reductase A, NarI membrane anchor (E. coli)
3D_helix set 		P11350 C27737 RDECNG 1Q16 Bertero, M.G., et al. (2003). Nature Struct Biol, 10, 681-687
NrfH (Desulfovibrio vulgaris)
3D_helix set 		2J7A Rodrigues, M.L., et al. (2006). EMBO J, 25, 5951-5960
phospholamban pentamer (human)
3D_helix set 		PPLA_HUMAN A40424 1ZLL Oxenoid, K., et al. (2005). Proc Natl Acad Sci USA, 102, 10870-10875
photosystem I A subunit (Synechococcus elongatus)
3D_helix set 		P25896 1JB0 Jordan, P., et al. (2001). Nature, 411, 909-917
photosystem I B subunit (Synechococcus elongatus)
3D_helix set 		P25897 1JB0 Jordan, P., et al. (2001). Nature, 411, 909-917
photosystem I F subunit* (Synechococcus elongatus)
3D_helix set 		P0A401 1JB0 Jordan, P., et al. (2001). Nature, 411, 909-917
photosystem I I subunit(Synechococcus elongatus)
3D_helix set 		P25900 1JB0 Jordan, P., et al. (2001). Nature, 411, 909-917
photosystem I J subunit (Synechococcus elongatus)
3D_helix set 		P25901 1JB0 Jordan, P., et al. (2001). Nature, 411, 909-917
photosystem I K subunit (Synechococcus elongatus)
3D_helix set 		P20453 1JB0 Jordan, P., et al. (2001). Nature, 411, 909-917
photosystem I L subunit (Synechococcus elongatus)
3D_helix set 		P25902 1JB0 Jordan, P., et al. (2001). Nature, 411, 909-917
photosystem I M subunit (Synechococcus elongatus)
3D_helix set 		P25903 1JB0 Jordan, P., et al. (2001). Nature, 411, 909-917
photosystem I X subunit (Synechococcus elongatus)
3D_helix set 		Q8DKP6 1JB0 Jordan, P., et al. (2001). Nature, 411, 909-917
photosystem II core light harvesting protein (Thermosynechococcus elongatus)
3D_helix set 		Q8DIQ1 1S5L Ferreira, K.N., et al. (2004). Science, 303, 1831-1838
Photosystem II CP43 protein (Thermosynechococcus elongatus)
3D_helix set 		Q8DIF8 1S5L Ferreira, K.N., et al. (2004). Science, 303, 1831-1838
Photosystem II Cytochrome b559 alpha subunit (Thermosynechococcus elongatus)
3D_helix set 		Q8DIP0 1S5L Ferreira, K.N., et al. (2004). Science, 303, 1831-1838
Photosystem II Cytochrome b559 beta subunit(Thermosynechococcus elongatus)
3D_helix set 		Q8DIN9 1S5L Ferreira, K.N., et al. (2004). Science, 303, 1831-1838
Photosystem II D2 protein (Thermosynechococcus elongatus)
3D_helix set 		Q8CM25 1S5L Ferreira, K.N., et al. (2004). Science, 303, 1831-1838
Photosystem II PsbH protein(Thermosynechococcus elongatus)
3D_helix set 		Q8DJ43 1S5L Ferreira, K.N., et al. (2004). Science, 303, 1831-1838
Photosystem II PsbI protein (Thermosynechococcus elongatus)
3D_helix set 		Q8DJZ6 1S5L Ferreira, K.N., et al. (2004). Science, 303, 1831-1838
Photosystem II PsbJ protein (Thermosynechococcus elongatus)
3D_helix set 		P59087 1S5L Ferreira, K.N., et al. (2004). Science, 303, 1831-1838
Photosystem II PsbK protein (Thermosynechococcus elongatus)
3D_helix set 		Q9F1K9 1S5L Ferreira, K.N., et al. (2004). Science, 303, 1831-1838
Photosystem II PsbL protein (Thermosynechococcus elongatus)
3D_helix set 		Q8DIN8 1S5L Ferreira, K.N., et al. (2004). Science, 303, 1831-1838
Photosystem II PsbM protein (Thermosynechococcus elongatus)
3D_helix set 		Q8DHA7 1S5L Ferreira, K.N., et al. (2004). Science, 303, 1831-1838
Photosystem II PsbN protein (Thermosynechococcus elongatus)
3D_helix set 		Q8DJ42 1S5L Ferreira, K.N., et al. (2004). Science, 303, 1831-1838
Photosystem II PsbT protein (Thermosynechococcus elongatus)
3D_helix set 		Q8DIQ0 1S5L Ferreira, K.N., et al. (2004). Science, 303, 1831-1838
Photosystem II PsbX protein (Thermosynechococcus elongatus)
3D_helix set 		Q8DHE6 1S5L Ferreira, K.N., et al. (2004). Science, 303, 1831-1838
Photosystem II PsbZ protein (Thermosynechococcus elongatus)
3D_helix set 		Q8DHJ2 1S5L Ferreira, K.N., et al. (2004). Science, 303, 1831-1838
Photosystem II Q(B) protein (Thermosynechococcus elongatus)
3D_helix set 		P0A444 S26586 1S5L Ferreira, K.N., et al. (2004). Science, 303, 1831-1838
reaction center chain H (Thermochromatium tepidum)
3D_helix set 		1EYS Nogi, T., et al. (2000). Proc Nat Acad Sci USA, 97, 13561-13566
reaction center chain L (Thermochromatium tepidum)
3D_helix set 		1EYS Nogi, T., et al. (2000). Proc Nat Acad Sci USA, 97, 13561-13566
reaction center chain M (Thermochromatium tepidum)
3D_helix set 		1EYS Nogi, T., et al. (2000). Proc Nat Acad Sci USA, 97, 13561-13566
Reaction center. Chain H (R. sphaeroides)
3D_helix set 		P11846 A26538 2RCR 4RCR Allen, J.P., et al. (1987). Proc Natl Acad Sci USA, 84, 6162-6166
Reaction center. Chain H (R. viridis)
3D_helix set 		P06008 A22841 1PRC Deisenhofer, J., et al. (1985). Nature, 318, 618-624
Reaction center. Chain L (R. sphaeroides)
3D_helix set 		P02954 WNRFLS 2RCR 4RCR Allen, J.P., et al. (1987). Proc Natl Acad Sci USA, 84, 6162-6166
Reaction center. Chain L (R. viridis)
3D_helix set 		P06009 A25102 1PRC Deisenhofer, J., et al. (1985). Nature, 318, 618-624
Reaction center. Chain M (R. sphaeroides)
3D_helix set 		P02953 WNRFMS 2RCR 4RCR Allen, J.P., et al. (1987). Proc Natl Acad Sci USA, 84, 6162-6166
Reaction center. Chain M (R. viridis)
3D_helix set 		P06010 B25102 1PRC Deisenhofer, J., et al. (1985). Nature, 318, 618-624
rhodopsin (bovine)
3D_helix set 		P02699 OOBO 1F88 Palczewski, K., et al. (2000). Science, 289, 739-745
Rhomboid peptidase (Haemophilus influenzae)
3D_helix set 		P44783 I64081 2NR9 Lemieux, M.J., et al. (2007). Proc Natl Acad Sci USA, 104, 750-754
Rhomboid Protease GlpG (Escherichia coli)
3D_helix set 		GLPG_ECOLI 2IC8 Wang, Y., et al. (2006). Nature, 444, 179-183
SecY complex, alpha subunit (Methanococcus jannaschii)
3D_helix set 		Q60175 1RHZ 1RH5 Van den Berg, B., et al. (2003). Nature, 427, 36-44
SecY complex, beta subunit (Methanococcus jannaschii)
3D_helix set 		1RHZ 1RH5 Van den Berg, B., et al. (2003). Nature, 427, 36-44
SecY complex, gamma subunit (Methanococcus jannaschii)
3D_helix set 		Q57817 1RHZ 1RH5 Van den Berg, B., et al. (2003). Nature, 427, 36-44
sensory rhodopsin (Anabaena)
3D_helix set 		Q8YSC4 AF2201 1XIO Vogeley, L., et al. (2004). Science, 306, 1390-1393
sensory rhodopsin II (N. pharaonis)
3D_helix set 		P42196 S55300 1H68 1JGJ Royant, A., et al. (2001). Proc Natl Acad Sci USA, 98, 10131-10136
sensory rhodopsin transducer (N. pharaonis)
3D_helix set 		P42259 S55299 1H2S Gordeliy, V.I., et al. (2002). Nature, 419, 484-487
succinate dehydrogenase C subunit (Escherichia coli)
3D_helix set 		P10446 1NEK Yankovskaya, V., et al. (2003). Science, 299, 700-704
succinate dehydrogenase D subunit (Escherichia coli)
3D_helix set 		P10445 1NEK Yankovskaya, V., et al. (2003). Science, 299, 700-704
ubiquinol oxidase subunit I (E. coli)
3D_helix set 		P18401 A85540 B42226 E90689 1FFT Abramson, J., et al. (2000). Nature Struc Biol, 7, 910-917
ubiquinol oxidase subunit II (E. coli)
3D_helix set 		P0ABJ1 A42226 1FFT Abramson, J., et al. (2000). Nature Struc Biol, 7, 910-917
ubiquinol oxidase subunit III(E. coli)
3D_helix set 		P18402 C4226 1FFT Abramson, J., et al. (2000). Nature Struc Biol, 7, 910-917
alkane hydroxylase (Pseudomonas oleovorans)
1D_helix set 		P12691 A31266 van Beilen, J.B., et al. (1992). J Biol Chem, 267, 9194-9201
Antigen peptide transporter TAP1 (human)
1D_helix set 		Q03518 Schrodt, S., et al. (2006). J Biol Chem, 281, 6455-6462
Arginine permease (yeast)
1D_helix set 		P04817 QRBYPR Ahmed, M., et al. (1988). Mol Microbiol, 2, 627-635
ArsB protein (E. coli)
1D_helix set 		P08691 B25937 Wu, J.H., et al. (1992). J Biol Chem, 267, 12570-12576
colicin A immunity protein (C. freundii)
1D_helix set 		P05701 IMEBAC Geli, V., et al. (1989). Mol Microbiol, 3, 679-687
colicin E1 immunity protein (E. coli)
1D_helix set 		P02985 IMECE1 Song, H.Y., et al. (1991). J Bacteriol, 173, 2935-2943
CpxA chemotaxis protein (E. coli)
1D_helix set 		P08336 S40855 Weber, R.F., et al. (1988). J Mol Biol, 203, 467-478
Cytosine Permease (E. coli)
1D_helix set 		P25525 S22661 Danielsen, S., et al. (1995). Microbiology, 141, 2905-2913
diacylglycerol kinase (E. coli)
1D_helix set 		P00556 KIECDG Smith, R.L., et al. (1994). J Bacteriol, 176, 5459-5465
FtsL
1D_helix set 		P22187 A45278 Guzman, L.-M., et al. (1992). J Bacteriol, 174, 7716-7728
FtsQ cell division protein (E. coli)
1D_helix set 		P06136 CEECQ Carson, M.J., et al. (1991). J Bacteriol, 173, 2187-2195
Gamma secretase APH-1 subunit (human)
1D_helix set 		Q96BI3 Fortna, R.R., et al. (2004). J Biol Chem, 279, 3685-3693
gamma-aminobutyrate transporter (E. coli)
1D_helix set 		P25527 H65045 Hu, L.A., et al. (1998). Biochem. J., 336, 69-76
gamma-secretase component PEN-2 (Caenorhabditis elegans)
1D_helix set 		Q9U357 T25417 Crystal, A.S., et al. (2003). J Biol Chem, 278, 20117-20123
Glucose 6-PO4 translocase (human)
1D_helix set 		O43826 Pan, C.-J., et al. (1999). J Biol Chem, 274, 13865-13869
H+-translocating pyrophosphatase (Streptomyces coelilcolor)
1D_helix set 		Q9X913 T36668 Mimura, H., et al. (2004). J Biol Chem, 279, 35106-35112
High-affinity nickel transporter (A. eutrophus)
1D_helix set 		P23516 A39512 Eitinger, T., et al. (1994). Mol Microbiol, 12, 1025-1032
His periplasmic permease. M protein (S. typhimurium)
1D_helix set 		P02912 MMEBMT Kerppola, R.E., et al. (1992). J Biol Chem, 267, 2329-2336
His periplasmic permease. Q protein (S. typhimurium)
1D_helix set 		P02913 MMEBQT Kerppola, R.E., et al. (1992). J Biol Chem, 267, 2329-2336
HMG-CoA. HMG1 gene (yeast)
1D_helix set 		P12683 A30239 Sengstag, C., et al. (1990). Mol Cell Biol, 10, 672-680
HMG-CoA. HMG2 gene (yeast)
1D_helix set 		P12684 B30239 Sengstag, C., et al. (1990). Mol Cell Biol, 10, 672-680
Insig-1 Lipid Synthesis Regulator (human)
1D_helix set 		O15503 Deramisco, J.D., et al. (2004). J Biol Chem, 279, 8487-8496
maltose transport protein. malF (E.coli)
1D_helix set 		P02916 MMECMF Froshauer, S., et al. (1988). J Mol Biol, 200, 501-511
maltose transport protein. malG (E. coli)
1D_helix set 		P07622 MMECMG Boyd, D., et al. (1993). J Bacteriol, 175, 553-556
manitol permease (E. coli)
1D_helix set 		P00550 WQEC2M Sugiyama, J.E., et al. (1991). Proc Natl Acad Sci U S A, 88, 9603-9607
melibiose carrier (Escherichia coli)
1D_helix set 		P02921 BDEC Botfield, M. C., et al. (1992). J Biol Chem, 267, 1818-1822
metal-tetracycline/H+ antiporter (E. coli)
1D_helix set 		P02980 YTECT0 Tamura, N., et al. (2001). J Biol Chem, 276, 20330-20339
MotA protein (E. coli)
1D_helix set 		P09348 QRECMA Zhou, J., et al. (1995). J Mol Biol, 251, 237-242
MotB chemotaxis protein (E. coli)
1D_helix set 		P09349 QRECMB C85802 Chun, S.Y., et al. (1988). Science, 239, 276-278
Na+/proline transporter (E. coli)
1D_helix set 		P07117 JGECPP Wegener, C., et al. (2000). Biochemistry, 39, 4831-4837
NAD(P) transhydrogenase, alpha (Escherichia coli)
1D_helix set 		P07001 DEECXA Meuller, J., et al. (1999). J. Biol. Chem., 274, 19072-19080
NAD(P) transhydrogenase, beta (Escherichia coli)
1D_helix set 		P07002 DEECXB D90917 Meuller, J., et al. (1999). J. Biol. Chem., 274, 19072-19080
NhaB Na/H antiporter (Vibrio alginolyticus)
1D_helix set 		Enomoto, H., et al. (1998). Biochim Biophys Acta, 1370, 77-86
Nramp (Escherichia coli)
1D_helix set 		P77145 G91037 Courville, P., et al. (2004). J Biol Chem, 279, 3318-3326
O-antigen polymerase (Shigella flexneri)
1D_helix set 		P37784 C36966 Daniels, C., et al. (1998). Mol Microbiol, 28, 1211-1222
plant light-harvesting complex (pea)
1D_helix set 		P07371 CDPM80 Kühlbrandt, W., et al. (1994). Nature, 367, 614-621
sec61p (Saccharomyces cerevisiae)
1D_helix set 		P32915 A60043 Wilkinson, B.M., et al. (1996). J Biol Chem, 271, 25590-25597
TetA tetracycline resistance protein (E. coli)
1D_helix set 		P02981 YTEC32 Allard, J.D., et al. (1992). J Biol Chem, 267, 17809-17819
tetracycline efflux protein. Tet(K) (S. aureus)
1D_helix set 		P02983 S42238 Hirata, T., et al. (1998). J Biochem, 124, 1206-1211
TolQ protein (Escherichia coli)
1D_helix set 		P05828 BVECTQ Vianney, A., et al. (1994). J Bacteriol, 176, 822-829
VirA sensory protein (A. tumefaciens)
1D_helix set 		P10799 S04035 Melchers, L.S., et al. (1989). EMBO J, 8, 1919-1925
alpha-hemolysin (S. aureus)
3D_other set 		P09616 S69209 7AHL Song, L., et al. (1996). Science, 274, 1859-1866
FadL (E. coli)
3D_other set 		P10384 F65007 1T16 1T1L Van den Berg, B., et al. (2004). Science, 304, 1506-1509
fatty acid amide hydrolase* (Rattus norvegicus)
3D_other set 		P97612 1MT5 Bracey, M.H., et al. (2002). Science, 298, 1793-1796
FecA (E. coli)
3D_other set 		P13036 QRECFA 1KMO 1KMP Ferguson, A.D., et al. (2002). Science, 295, 1715-1719
FepA (E. coli)
3D_other set 		P05825 QRECFC 1FEP Buchanan, S.K., et al. (1999). Nature Struct Biol, 6, 56-63
Ferric hydroxamate uptake receptor (E. coli)
3D_other set 		P06971 2FCP Ferguson, A.D., et al. (1998). Science, 282, 2215-2220
FptA (Pseudomonas aeruginosa)
3D_other set 		P42512 A36942 1XKW Cobessi, D., et al. (2005). J Mol Biol, 352, 893-904
Hia autotransporter (Haemophilus influenzae)
3D_other set 		Q48152 2GR8 2GR7 Meng, G., et al. (2006). EMBO J, 25, 2297-2304
maltoporin (E. coli)
3D_other set 		P02943 QRECL 1MAL Schirmer, T., et al. (1995). Science, 267, 512-514
maltoporin (S. typhimurium)
3D_other set 		P26466 A60177 2MPR Meyer, J.E.W., et al. (1997). J Mol Biol, 266, 761-775
Monoamine oxidase B* (human)
3D_other set 		P27338 B36175 JH0818 1GOS Binda, C., et al. (2002). Nature Struct Biol, 9, 22-26
MspA (Mycobacterium smegmatis)
3D_other set 		Q9RLP7 1UUN Faller, M., et al. (2004). Science, 303, 1189-1192
NaIP translocator domain (Neisseria meningitidis)
3D_other set 		Q8GKS5 1UYN 1UYO Oomen, C.J., et al. (2004). EMBO J, 23, 1257-1266
NspA surface protein A (Neisseria meningitidis)
3D_other set 		P96943 1P4T Vandeputte-Rutten, L., et al. (2003). J Biol Chem, 278, 24825-24830
Omp32 (Comamonas acidovorans)
3D_other set 		P24305 A38528 1E54 Zeth, K., et al. (2000). Structure, 8, 981-992
OmpA (E. coli)
3D_other set 		P0A910 A90759 G85622 1BXW 1QJP 1G90 Pautsch, A., et al. (1998). Nature Struct Biol, 5, 1013-1017
OmpF porin* (E. coli)
3D_other set 		P02931 MMECF 1OPF Cowan, S.W., et al. (1992). Nature, 358, 727-733
OmpK36 osmoporin* (Klebsiella pneumoniae)
3D_other set 		Q48473 1OSM Dutzler, R., et al. (1999). Structure, 7, 425-434
OmpT (Escherichia coli)
3D_other set 		P09169 A31387 1I78 Vandeputte-Rutten, L., et al. (2001). EMBO J, 20, 5033-5039
OmpW (E. coli)
3D_other set 		P0A915 S07797 T45501 2F1T 2F1V Hong, H., et al. (2006). J Biol Chem, 281, 7568-7577
OmpX (E. coli)
3D_other set 		P0A917 1QJ9 Vogt, J., et al. (1999). Structure, 7, 1301-1309
OpcA (Neisseria meningitidis)
3D_other set 		A44611 C81893 1K24 Prince, S.M., et al. (2002). Proc Natl Acad Sci USA, 99, 3417-3421
OprP (Pseudomonas aeruginosa)
3D_other set 		P05695 2O4V Moraes, T.F., et al. (2007). Nat.Struct.Mol.Biol., 14, 85-87
outer membrane phospholipase A (E. coli)
3D_other set 		P0A921 PSECA1 1QD5 1QD6 Snijder, H.J., et al. (1999). Nature, 401, 717-721
outer membrane porin (R. blastica)
3D_other set 		P39767 S38806 1PRN Kreusch, A., et al. (1994). J Mol Biol, 243, 891-905
outer membrane protein TolC* (Escherichia coli)
3D_other set 		P02930 MMECTC 1EK9 Koronakis, V., et al. (2000). Nature, 405, 914-919
PagP (Escherichia coli)
3D_other set 		P37001 1MM4 Hwang, P.M., et al. (2002). Proc Nat Acad Sci, 99, 13560-13565
PhoE phosphoporin* (E. coli)
3D_other set 		P02932 MMECPE 1PHO Cowan, S.W., et al. (1992). Nature, 358, 727-733
porin (R. capsulatus)
3D_other set 		P31243 S16070 2POR Weiss, M.S., et al. (1992). J Mol Biol, 227, 493-509
porin scrY, sucrose-specific (S. typhimurium)
3D_other set 		P22340 S15193 1A0S 1A0T Forst, D., et al. (1998). Nature Struct Biol, 5, 37-46
prostaglandin synthase-1 (COX-1)* (sheep)
3D_other set 		P05979 S00561 1PRH Picot, D., et al. (1994). Nature, 367, 243-249
prostaglandin synthase-2 (COX-2)* (Mus musculus)
3D_other set 		Q05769 1CX2 Kurumbail, R.G., et al. (1996). Nature, 384, 644-648
squalene-hopene cyclase* (Alicyclobacillus acidocaldarius)
3D_other set 		P33247 A43300 S13856 2SQC Wendt, K.U., et al. (1999). J Mol Biol, 286, 175-187
vitamin B12 receptor (E. coli)
3D_other set 		P06129 QRECBT 1NQE Chimento, D.P., et al. (2003). Nature Struct Biol, 10, 394-401