MPtopo Database from the Stephen White Lab
Protein Name SwissProt ID PIR Unique ID PDB ID Reference (linked to Pub Med)
AChR pore alpha subunit (Torpedo marmorata)
3D_helix set
P02711 1OED Miyazawa, A., et al. (2003). Nature, 423, 949-955
AChR pore beta subunit (Torpedo marmorata)
3D_helix set
Q6S3I0 1OED Miyazawa, A., et al. (2003). Nature, 423, 949-955
AChR pore delta subunit (Torpedo marmorata)
3D_helix set
Q6S3H8 1OED Miyazawa, A., et al. (2003). Nature, 423, 949-955
AChR pore gamma subunit (Torpedo marmorata)
3D_helix set
Q6S3H9 1OED Miyazawa, A., et al. (2003). Nature, 423, 949-955
AcrB multidrug transporter (E. coli)
3D_helix set
P31224 B36938 1IWG Murakami, S., et al. (2002). Nature, 419, 587-593
ADP/ATP carrier protein* (bovine)
3D_helix set
P02722 A43646 XWBO 1OKC Pebay-Peyroula, E., et al. (2003). Nature, 426, 39-44
amonia transporter AmtB (E. coli)
3D_helix set
P69681 A90692 C64775 E85542 1U7G Khademi, S., et al. (2004). Science, 305, 1587-1594
aquaporin 1* (bovine)
3D_helix set
P47865 JC2348 1J4N Sui, H.X., et al. (2001). Nature, 414, 872-878
aquaporin 1* (human)
3D_helix set
P29972 A41616 1FQY Murata, K. Mitsuoka, et al. (2000). Nature, 407, 599-605
aquaporin Z* (E. coli)
3D_helix set
P48838 C64826 1RC2 Savage, D.F., et al. (2003). PLoS Biology, 3, 334-340
bacteriorhodopsin (H. salinarium)
3D_helix set
P02945 RAHSB 1BRX 2BRD 1AP9 1AT9 1BRD Luecke, H., et al. (1999). J Mol Biol, 291, 899-911
BtuCD ABC transporter, BtuC subunit (Escherichia coli)
3D_helix set
Q8X4L7 B90931 1L7V Locher, K.P., et al. (2002). Science, 296, 1091-1098
Ca ATPase, SR (rabbit)
3D_helix set
P04191 PWRBFC 1EUL Toyoshima, C., et al. (2000). Nature, 405, 647-655
ClC chloride channel* (E. coli)
3D_helix set
P37019 C64739 1KPK 1OTS Dutzler, R., et al. (2002). Nature, 415, 287-294
ClC chloride channel* (S. typhimurium)
3D_helix set
Q8ZRP8 1KPL Dutzler, R., et al. (2002). Nature, 415, 287-294
CorA Mg2+ transporter (Thermotoga maritima)
3D_helix set
Q9WZ31 H72360 2BBH Lunin, V.V., et al. (2006). Nature, 440, 833-837
Cysteine Oxidase DsbB (Escherichia coli)
3D_helix set
P0A6M2 F64864 2HI7 Inaba, K., et al. (2006). Cell, 127, 789-801
cyt. b6f complex, cyto b6 subunit (Mastigocladus laminosus)
3D_helix set
1UM3 Kurisu, G., et al. (2003). Science, 302, 1009-1014
cyt. b6f complex, cytochrome f (Mastigocladus laminosus)
3D_helix set
1UM3 Kurisu, G., et al. (2003). Science, 302, 1009-1014
cyt. b6f complex, PetG (Mastigocladus laminosus)
3D_helix set
1UM3 Kurisu, G., et al. (2003). Science, 302, 1009-1014
cyt. b6f complex, PetL (Mastigocladus laminosus)
3D_helix set
1UM3 Kurisu, G., et al. (2003). Science, 302, 1009-1014
cyt. b6f complex, PetM (Mastigocladus laminosus)
3D_helix set
1UM3 Kurisu, G., et al. (2003). Science, 302, 1009-1014
cyt. b6f complex, PetN (Mastigocladus laminosus)
3D_helix set
1UM3 Kurisu, G., et al. (2003). Science, 302, 1009-1014
cyt. b6f complex, Rieske iron-sulfur protein (Mastigocladus laminosus)
3D_helix set
1UM3 Kurisu, G., et al. (2003). Science, 302, 1009-1014
cyt. b6f complex, subunit IV (Mastigocladus laminosus)
3D_helix set
1UM3 Kurisu, G., et al. (2003). Science, 302, 1009-1014
cyto C oxidase. Subunit VIIb (bovine)
3D_helix set
P13183 OSBO7B 1OCC Tsukihara, T., et al. (1996). Science, 272, 1136-1144
cyto. bc1 complex. Chain C (bovine)
3D_helix set
P00157 CBBO 1BGY 1QCR 1BCC Iwata, S., et al. (1998). Science, 281, 64-71
cyto. bc1 complex. Chain D (bovine)
3D_helix set
P00125 CCBO1 1BGY 1QCR 1BCC Iwata, S., et al. (1998). Science, 281, 64-71
cyto. bc1 complex. Chain E (bovine)
3D_helix set
P13272 A34660 1BGY 1QCR 1BCC Iwata, S., et al. (1998). Science, 281, 64-71
cyto. bc1 complex. Chain G (bovine)
3D_helix set
P13271 A24864 1BGY 1QCR 1BCC Iwata, S., et al. (1998). Science, 281, 64-71
cyto. bc1 complex. Chain J (bovine)
3D_helix set
P00130 CCBO17 1BGY 1QCR 1BCC Iwata, S., et al. (1998). Science, 281, 64-71
cyto. bc1 complex. Chain K (bovine)
3D_helix set
P07552 CBBOC6 1BGY 1QCR 1BCC Iwata, S., et al. (1998). Science, 281, 64-71
cyto. C oxidase. Subunit I (bovine)
3D_helix set
P00396 ODBO1 1OCC Tsukihara, T., et al. (1996). Science, 272, 1136-1144
cyto. C oxidase. Subunit I (P. denitrificans)
3D_helix set
P98002 S08270 1QLE Iwata, S., et al. (1995). Nature, 376, 660-669
cyto. C oxidase. Subunit II (bovine)
3D_helix set
P00404 OBBO2 1OCC Tsukihara, T., et al. (1996). Science, 272, 1136-1144
cyto. C oxidase. Subunit II (P. denitrificans)
3D_helix set
P08306 1QLE Iwata, S., et al. (1995). Nature, 376, 660-669
cyto. C oxidase. Subunit III (bovine)
3D_helix set
P00415 OTBO3 1OCC Tsukihara, T., et al. (1996). Science, 272, 1136-1144
cyto. C oxidase. Subunit III (P. denitrificans)
3D_helix set
P06030 S03807 1QLE Iwata, S., et al. (1995). Nature, 376, 660-669
cyto. C oxidase. Subunit IV (bovine)
3D_helix set
P00423